Publications
2022
Plasma membrane effects of sphingolipid-synthesis inhibition by myriocin in CHO cells: a biophysical and lipidomic study
Sci Rep 12, 955 (2022) doi: 10.1038/s41598-021-04648-z
Rotational Spectroscopy of 2-Furoic Acid and Its Dimer: Conformational Distribution and Double Proton Tunneling
ChemPhysChem (2022), doi.org/10.1002/cphc.202200176
Robustness of DNA looping across multiple cell divisions in individual bacteria
National Academy of Sciences (2022), 119 (33) e2200061119; doi: 10.1073/pnas.2200061119
Boosting Cholesterol Efflux from Foam Cells by Sequential Administration of rHDL to Deliver MicroRNA and to Remove Cholesterol in a Triple-Cell Two-Dimensional Atherosclerosis Model
Small. Accepted Author Manuscript, (2022) doi: 10.1039/d1en00967b
Chapter 6 - Cholesterol and ceramide: an unlikely pairCholesterol and ceramide: an unlikely pair
Cholesterol, From Chemistry and Biophysics to the Clinic (2022), Pages 111-126, doi.org/10.1016/B978-0-323-85857-1.00017-1
Four Cholesterol-Recognition Motifs in the Pore-Forming and Translocation Domains of Adenylate Cyclase Toxin Are Essential for Invasion of Eukaryotic Cells and Lysis of Erythrocytes. International journal of molecular sciences, 2022, 23(15)
doi.org/10.3390/ijms23158703
ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation
Journal of Structural Biology (2022), doi.org/10.1016/j.jsb.2022.107872
Reply to Roy and Pucadyil: A gain of function by a GTPase-impaired Drp1
PNAS (2022), doi.org/10.1073/pnas.2202391119
Thermal effects of plumage coloration
Review article, Ibis (2022), doi: 10.1111/ibi.13100
Cryo-EM structure of translesion DNA synthesis polymerase ζ with a base pair mismatch
Nature Communications,13, 1050 (2022) doi: 10.1038/s41467-022-28644-7
Quantitative super-resolution imaging of pathological aggregates reveals distinct toxicity profiles in different synucleinopathies
Proceedings of the National Academy of Sciences of the United States of America (2022) doi/10.1073/pnas.2205591119
Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes
Neuroinformatics. 2022 Apr;20(2):437-450. doi: 10.1007/s12021-021-09556-1.
Machine Learning Study of Metabolic Networks vs ChEMBL Data of Antibacterial Compounds
Molecular Pharmaceutics (2022), DOI: 10.1021/acs.molpharmaceut.2c00029
2023
Redox regulation of KV7 channels through EF3 hand of calmodulin
eLife (2023) 12:e81961. DOI: 10.7554/eLife.81961
Current Progress and Challenges in Large-scale 3D Mitochondria Instance Segmentation
IEEE Transactions on Medical Imaging (2023). DOI: 10.1109/TMI.2023.3320497.
Effect of ATG12–ATG5-ATG16L1 autophagy E3-like complex on the ability of LC3/GABARAP proteins to induce vesicle tethering and fusion
Cell Mol Life Sci. 2023 Feb 2;80(2):56. doi: 10.1007/s00018-023-04704-z.
Review of structural design guiding the development of lipid nanoparticles for nucleic acid delivery
Current Opinion in Colloid & Interface Science, Volume 66, 2023,
101705, ISSN 1359-0294. doi:10.1016/j.cocis.2023.101705.
Implications of a multiscale structure of the yeast nuclear pore complex
Molecular Cell, Volume 83, Issue 18, 2023, Pages 3283-3302.e5. doi: 10.1016/j.molcel.2023.08.025
N-aryltetrahydroisoquinoline derivatives as HA-CD44 interaction inhibitors: Design, synthesis, computational studies, and antitumor effect
Eur J Med Chem. 2023 Oct 5;258:115570. doi: 10.1016/j.ejmech.2023.115570.
Molecular dynamics simulations of the calmodulin-induced α-helix in the SK2 calcium-gated potassium ion channel
J Biol Chem. 2023 Feb;299(2):102850. doi: 10.1016/j.jbc.2022.102850. Epub 2022 Dec 29.
Emergence of collective self-oscillations in minimal lattice models with feedback
Phys. Rev. E 108, 044204. Doi: 10.1103/PhysRevE.108.044204
Statistical modeling of adaptive neural networks explains co-existence of avalanches and oscillations in resting human brain
Nat Comput Sci (2023). doi.org/10.1038/s43588-023-00410-9
Structural analysis of ING3 protein and histone H3 binding
Int J Biol Macromol. 2023 Jul 1;242(Pt 1):124724. doi: 10.1016/j.ijbiomac.2023.124724. Epub 2023 May 4.
Review of structural design guiding the development of lipid nanoparticles for nucleic acid delivery
Review. Current Opinion in Colloid & Interface Science, Volume 66, 2023,
101705, ISSN 1359-0294. doi:10.1016/j.cocis.2023.101705.
Modular adjuvant-free pan-HLA-DR-immunotargeting subunit vaccine against SARS-CoV-2 elicits broad sarbecovirus-neutralizing antibody responses
Cell Rep
. 2023 Apr 3;42(4):112391. doi: 10.1016/j.celrep.2023.112391Collectively autocatalytic sets
Cell Reports Physical Science. 2023. Volume 4, Issue 10. 101594. Doi:10.1016/j.xcrp.2023.101594.
Architecture of the ESCPE-1 membrane coat
Nature Structural & Molecular Biology volume 30, pages958–969 (2023)
Collective catalysis under spatial constraints: Phase separation and size-scaling effects on mass action kinetics
Phys. Rev. E 108, 044410. Doi: 10.1103/PhysRevE.108.044410
Statistical mechanics of biomolecular condensates via cavity methods
iScience, Volume 26, Issue 4, 2023, 106300, ISSN 2589-0042. doi.org/10.1016/j.isci.2023.106300.
Lipids in Mitochondrial Macroautophagy: Phase Behavior of Bilayers Containing Cardiolipin and Ceramide
Int. J. Mol. Sci. 2023, 24(6), 5080; https://doi.org/10.3390/ijms24065080
Raman Spectroscopy as a Tool to Study the Pathophysiology of Brain Diseases
Review. Int J Mol Sci. 2023 Jan 25;24(3):2384. doi: 10.3390/ijms24032384.
CartoCell, a high-content pipeline for 3D image analysis, unveils cell morphology patterns in epithelia
Cell Reports Methods, 2023, 100597, ISSN 2667-2375, doi: 10.1016/j.crmeth.2023.100597.
HIV-2 Immature Particle Morphology Provides Insights into Gag Lattice Stability and Virus Maturation
J Mol Biol. 2023 Aug 1;435(15):168143. doi: 10.1016/j.jmb.2023.168143. Epub 2023 May 6.
The protometabolic nature of prebiotic chemistry
Review. Chem Soc Rev. (2023) Oct 30;52(21):7359-7388. doi: 10.1039/d3cs00594a.
High-Density Lipoprotein function is modulated by the SARS-CoV-2 spike protein in a lipid-type dependent manner
J Colloid Interface Sci. 2023 Sep;645:627-638. doi:10.1016/j.jcis.2023.04.137. Epub 2023 Apr 29.
METTL1 promotes tumorigenesis through tRNA-derived fragment biogenesis in prostate cancer
Molecular Cancer volume 22, Article number: 119 (2023)
On an integrable family of oscillators with linear and quadratic damping
Chaos, Solitons & Fractals, Volume 176, 2023, 114082, ISSN 0960-0779, doi:10.1016/j.chaos.2023.114082.
Cyclic di-AMP traps proton-coupled K+ transporters of the KUP family in an inward-occluded conformation
Nature Communications volume 14, Article number: 3683 (2023)
Molecular sensing and manipulation of protein oligomerization in membrane nanotubes with bolaamphiphilic foldamers
J Am Chem Soc. (2023). doi: 10.1021/jacs.3c05753
Diagnosis of Familial Dysbetalipoproteinemia Based on the Lipid Abnormalities Driven by APOE2/E2 Genotype
Clinical Chemistry, Volume 69, Issue 2, February 2023, Pages 140–148, doi:10.1093/clinchem/hvac213